A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
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Sep 16, 2026 - Nextflow
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epitope
Here are 14 public repositories matching this topic...
Snakemake-based computational workflow for neoantigen prediction from diverse sources
snakemake gene-fusion indels immunotherapy vaccine peptide snakemake-workflow splicing epitope neoantigens exitron neoepitope
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Sep 13, 2026 - Python
TransHLA: A hybrid transformer model for peptide-HLA epitope detection.
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Oct 19, 2024 - Python
A tool for downloading HLA alleles, epitopes and frequencies
python frequency parser command-line download dna alignment mhc hla python-module allele-frequencies alleles multiple-sequence-alignment epitope epitopes
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Jul 21, 2023 - Python
An R package and framework for epitope-specific antibody profiling for the data obtained with the Bead-Based Epitope Assay (BBEA)
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Jan 25, 2021 - R
IFNepitope: Designing of Interferon-Gamma Inducing MHC Class-II Binders
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May 9, 2026
Linear Epitope Predictions in SARS-CoV-19 Spike Protein
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Dec 11, 2020 - Jupyter Notebook
Differential presentation analysis of T cell epitopes associated with autoimmunity
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Mar 17, 2019 - R
Reproducible Nextflow + Python pipeline for TCR-epitope binding prediction with Bayesian calibration
machine-learning bioinformatics nextflow immunology tcr bayesian-neural-networks epitope protein-language-model esm2 blosum62
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Aug 5, 2026 - Python
Immune Control Architecture (ICA): a computational scoring framework for dengue vaccine epitope design.
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May 6, 2026 - Python
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