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@antigenomics

AntigenOmics

Omics of antigens and antigen receptor repertoires. Home of the VDJdb database and immunogenetics software developed by ISALGO lab.

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  1. vdjdb-db vdjdb-db Public

    Git-based antigen specificity database storage & management.

    Python 156 28

  2. arda arda Public

    High-throughput mapping and domain partitioning of antigen receptor sequences

    Python 56 20

  3. vdjmatch vdjmatch Public

    Matching T-cell receptor repertoires to a database of antigen specificities

    Python 39 7

  4. vdjtools vdjtools Public

    Analysis of immune repertoire sequencing results

    Python 145 42

  5. tcren tcren Public

    Predicting TCR:pMHC binding from structural data

    Jupyter Notebook 28 5

  6. mirpy mirpy Public

    Machine learning for Immune Repertoires

    Python 7 4

Repositories

Showing 10 of 62 repositories
  • vdjdb-web Public

    An interactive browser for the VDJdb database

    antigenomics/vdjdb-web's past year of commit activity
    TypeScript 16 AGPL-3.0 1 0 5 Updated Sep 13, 2026
  • seqtree Public

    Efficiently search and cluster highly similar short sequences

    antigenomics/seqtree's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 6, 2026
  • tcren Public

    Predicting TCR:pMHC binding from structural data

    antigenomics/tcren's past year of commit activity
    Jupyter Notebook 28 GPL-3.0 5 0 0 Updated Sep 4, 2026
  • vdjdb-db Public

    Git-based antigen specificity database storage & management.

    antigenomics/vdjdb-db's past year of commit activity
    Python 156 AGPL-3.0 28 129 0 Updated Aug 26, 2026
  • mirpy Public

    Machine learning for Immune Repertoires

    antigenomics/mirpy's past year of commit activity
    Python 7 GPL-3.0 4 0 0 Updated Aug 20, 2026
  • vdjtools Public

    Analysis of immune repertoire sequencing results

    antigenomics/vdjtools's past year of commit activity
    Python 145 GPL-3.0 42 0 0 Updated Aug 20, 2026
  • vdjmatch Public

    Matching T-cell receptor repertoires to a database of antigen specificities

    antigenomics/vdjmatch's past year of commit activity
    Python 39 GPL-3.0 7 0 0 Updated Aug 18, 2026
  • tcr-structures-visualization Public
    antigenomics/tcr-structures-visualization's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 18, 2026
  • migec Public

    An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequencing.

    antigenomics/migec's past year of commit activity
    C++ 43 GPL-3.0 19 1 0 Updated Aug 18, 2026
  • arda Public

    High-throughput mapping and domain partitioning of antigen receptor sequences

    antigenomics/arda's past year of commit activity
    Python 56 GPL-3.0 20 0 0 Updated Aug 15, 2026
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