#

hg19

Here are 12 public repositories matching this topic...

fulcrumgenomics / ref-solver

Identify which human reference genome was used to align a BAM/SAM/CRAM file

rust bioinformatics genomics sam bam reference-genome cram hg19 grch37 grch38 hg38

Updated Jul 19, 2026
Rust

ManavalanG / UniProt-genome-annotations-hg19

UniProt genome annotation data in hg19/GRCh37 coordinates

annotation genome uniprotkb hg19 grch37

Updated Jul 12, 2017
Python

renatopuga / somatico

GATK 4 Mutect2 Somático

somatic-variants tumor vep pon hg19 normal mutect2 colab-notebook gitpod gatk4

Updated Aug 23, 2026
Jupyter Notebook

metamaden / methyPre

Methylation array preprocessing.

bioconductor preprocessing combat normalization qc hg19 sva cpg hm450k illumina-bead-chip methylation-arrays minfi batch-correction swan-normalize illumina-normalize

Updated Sep 6, 2018
R

hisplan / cellranger-custom-ref-pkg

Building custom reference package for Cell Ranger ATAC and ARC

gencode hg19 cellranger-atac cellranger-arc mm9

Updated Aug 3, 2021
Jupyter Notebook

jingxinfu / TCGAdnloader

TCGA hg19 and hg38 data downloader.

rna-seq snv cnv tcga-data hg19 hg38

Updated Nov 25, 2020
Python

Frederick-abichahine / Oncogenomic-Somatic-Mutation-Analysis

Comprehensive somatic mutation analysis of paired tumor-control samples using high-throughput sequencing data. This project integrates variant calling, functional annotation, and structural alteration analysis to uncover clinically relevant genomic changes, estimate tumor purity and ploidy, and explore potential therapeutic targets in oncogenomics.

shell bioinformatics r cancer somatic-variants gatk cancer-genomics igv copy-number-variation hg19 tumor-segmentation tumor-purity-estimation tpes variant-calling-and-annotation tumor-ploidy-estimation clonetv2 computational-human-genomics

Updated Jul 24, 2025
Shell

nuno-agostinho / alternativeSplicingEvents.hg19

Alternative splicing event annotation for Human assembly (hg19)

annotation bioconductor alternative-splicing hg19

Updated Jan 5, 2021
R

tsy19900929 / N-Region

get bed file for N bases from a FASTA file

fasta bed hg19 nbases n-base-count unknown-bases

Updated Mar 14, 2022
Shell

aryeelab / tcgaWGBSData.hg19

sequencing tcga wgbs hg19

Updated Oct 29, 2018
R

ladachr-dot / vtools-genomics

🧬 A suite of Python CLI utilities for bioinformatics: automated PGS to PLINK conversion, genome build liftovers (hg19/hg38), and ISOGG ↔ Y-DNA haplogroup converter

python cli gui bioinformatics gwas tools genomics plink vcf ncbi gwas-catalog ncbi-database hg19 pgs pgs-catalog

Updated Aug 30, 2026
Python

snewhouse / exomiser-clone

genome ngs next-generation-sequencing variant-annotations hpo exome whole-exome-sequencing whole-genome-sequencing phive hg19 phenix exomiser genomiser remm hiphive exomewalker b37

Updated Sep 18, 2018

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