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1. octopus octopus Public

   Bayesian haplotype-based mutation calling

   C++ 327 37

2. bamsplit bamsplit Public

   Split a BAM file by haplotype support

   Python 16 1

3. polyploid polyploid Public

   Benchmarking variant calling in polyploids

   Jupyter Notebook 16 2

4. smcsmc smcsmc Public

   Demographic inference from whole genomes

   C++ 13 4

5. octopus-paper octopus-paper Public

   Paper for octopus variant caller

   Jupyter Notebook 3

6. EquivariantNetworks EquivariantNetworks Public

   Python 3