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@hodcroftlab

Hodcroft Lab (EVE)

The Epidemiology & Virus Evolution (EVE) Group at Swiss TPH!

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  1. covariants covariants Public

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Python 324 109

  2. simplot-cl simplot-cl Public

    Python 10

  3. ppx-plots ppx-plots Public

    Plots of Pathoplexus data

    HTML 2 2

  4. evd68_demo evd68_demo Public

    Demo files for EVD68 build

  5. enterovirus_a71 enterovirus_a71 Public

    Snakemake pipeline for creating interactive real-time phylogenetic trees

    Python 1

  6. coxsackievirus_a6 coxsackievirus_a6 Public

    Code for Coxsackievirus A6 build on nextstrain.org

    Python

Repositories

Showing 10 of 21 repositories
  • ppx-plots Public

    Plots of Pathoplexus data

    hodcroftlab/ppx-plots's past year of commit activity
    HTML 2 2 0 0 Updated Oct 7, 2026
  • ses2026 Public

    Website for 1st SES

    hodcroftlab/ses2026's past year of commit activity
    HTML 0 0 0 0 Updated Oct 2, 2026
  • coxsackievirus_a16 Public
    hodcroftlab/coxsackievirus_a16's past year of commit activity
    Python 0 0 0 0 Updated Oct 1, 2026
  • coxsackievirus_a6 Public

    Code for Coxsackievirus A6 build on nextstrain.org

    hodcroftlab/coxsackievirus_a6's past year of commit activity
    Python 0 0 0 0 Updated Oct 1, 2026
  • enterovirus_a71 Public

    Snakemake pipeline for creating interactive real-time phylogenetic trees

    hodcroftlab/enterovirus_a71's past year of commit activity
    Python 0 1 0 0 Updated Oct 1, 2026
  • covariants Public

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    hodcroftlab/covariants's past year of commit activity
    Python 324 AGPL-3.0 109 74 (8 issues need help) 29 Updated Oct 1, 2026
  • coxsackievirus_a10 Public
    hodcroftlab/coxsackievirus_a10's past year of commit activity
    Python 0 0 0 0 Updated Oct 1, 2026
  • hodcroftlab Public

    Website for hodcroft lab

    hodcroftlab/hodcroftlab's past year of commit activity
    SCSS 0 0 0 0 Updated Aug 30, 2026
  • template_nextstrain Public template

    Template for building your own Nextstrain workflow

    hodcroftlab/template_nextstrain's past year of commit activity
    Python 0 0 0 11 Updated Aug 22, 2026
  • evd68-converter Public
    hodcroftlab/evd68-converter's past year of commit activity
    JavaScript 0 0 0 0 Updated Aug 12, 2026
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