mitochondria

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

NOVOPlasty - The organelle assembler and heteroplasmy caller

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

A python and C++ library for reading and writing neuronal morphologies

Mitochondrial Alteration Enrichment and Genome Analysis Toolkit

Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020

a tool for predicting mitochondrial DNA deletions using soft-clipping

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

mitochondrial variant analysis tools

Module and script to remove contamination in assembled genomes before submission to ncbi

Stand-alone tool for methylation-based discrimination of mitochondrial DNA ONT reads

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.

A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

visualization of the human mitochondrial genome

Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics

EM segmentation of mitochondria from SNEMI3D data

Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data

R package to plot Human Mitochondrial Variants from Dataframes, VCF or JSON files