Pugh Lab
- 30 followers
- Toronto, Ontario, Canada
- http://pughlab.org
- trevor.pugh@utoronto.ca
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Repositories
- ctims-matchminer-engine Public
- cfWGS-MM-MRD Public Forked from DoryAbelman/cfWGS-MM-MRD
This directory contains scripts for "Cell-free DNA Whole Genome Sequencing for Non-Invasive MRD Detection in Multiple Myeloma" by Abelman et al., 2025
- mixcr_QC Public
- ped_CapTCRseq Public
Dynamics of peripheral T-cell repertoire in pediatric cancer patients over the course of chemoradiation
- EAC-ML-pipeline Public
This directory contains scripts for "Tumor-agnostic multimodal blood cell-free DNA analysis enables detection, monitoring, and risk stratification in esophageal adenocarcinoma " by Bartolomucci1 et al., 2026
- cfdna-myeloma-multiomics Public
Analysis and manuscript code for a targeted panel and shallow WGS study of peripheral blood and bone marrow cell-free DNA in multiple myeloma. Includes pipelines for feature processing (mutations, translocations, CNAs, BCR, fragmentomics), integration across cohorts, longitudinal tracking, and modeling of MRD/progression.
- oncographer Public
OncoGrapher: standardized, graph-based, clinical data abstraction tool leveraging the MOHCCN data standard
- MismatchResolveDX Public
This pipeline is used for the analysis of the MismatchResolveDx (previously the MultiMMR) sequencing panel (including shallow WGS and targeted sequencing of conventional DNA and methylation sites).
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