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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 278 87

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 67 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 233 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 221 48

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 16 10

Repositories

Showing 10 of 374 repositories
  • biovat Public

    BioVAT (BIOdiversity Variant Analysis Toolkit), a modular Nextflow pipeline for population genomics analysis of non-model organisms

    NBISweden/biovat's past year of commit activity
    Nextflow 0 MIT 0 35 (1 issue needs help) 1 Updated Sep 16, 2026
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli's past year of commit activity
    Go 6 AGPL-3.0 1 39 (1 issue needs help) 2 Updated Sep 16, 2026
  • sda-download-ui Public

    Repository containing the UI implementation of the sda-download service

    NBISweden/sda-download-ui's past year of commit activity
    TypeScript 0 AGPL-3.0 0 12 2 Updated Sep 16, 2026
  • DNAharvester Public

    DNAharvester: A Nextflow Pipeline for Analysing Highly Degraded DNA from Ancient and Historical Specimens

    NBISweden/DNAharvester's past year of commit activity
    Nextflow 13 GPL-3.0 0 14 0 Updated Sep 16, 2026
  • workshop-epigenomics Public
    NBISweden/workshop-epigenomics's past year of commit activity
    Lua 2 CC-BY-SA-4.0 1 0 0 Updated Sep 16, 2026
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation's past year of commit activity
    Python 5 0 0 0 Updated Sep 16, 2026
  • SCoRe_user_doc Public

    SCoRe user documentation

    NBISweden/SCoRe_user_doc's past year of commit activity
    Shell 0 GPL-3.0 0 4 0 Updated Sep 16, 2026
  • Training-Tech-shorts Public

    Short lessons, training various Research Software Engineering tools useful to our work.

    NBISweden/Training-Tech-shorts's past year of commit activity
    Markdown 13 18 44 0 Updated Sep 15, 2026
  • nf-core-aMeta Public

    An nf-core compliant version of aMeta; An ancient metagenomic profiling Snakemake workflow

    NBISweden/nf-core-aMeta's past year of commit activity
    Nextflow 2 MIT 3 0 0 Updated Sep 15, 2026
  • sda-bpctl Public

    Developer Tool for Big Picture Dataset Submissions

    NBISweden/sda-bpctl's past year of commit activity
    Go 0 AGPL-3.0 0 0 1 Updated Sep 15, 2026
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