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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City
README.md

Waldron Lab

Welcome to the Waldron lab for public health data science at the CUNY School of Public Health in New York City. I, Levi Waldron, teach biostatistics, have an active research program in cancer genomics and in metagenomic profiling of the human microbiome, develop methods within the intersection of statistical analysis and computation, and work to develop an inclusive community of researchers and students around open-source bioinformatics software and methods. My lab aims to generate new insights into human health, disease, and treatment through improved tools and novel analysis of publicly available data. I welcome anyone to get involved and join active communities working on BugSigDB: A Comprehensive Database of Microbial Signatures and the Microbiome Virtual International Forum.

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 73 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 151 31

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 9

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 34 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    PHP 8 8

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