fmalmeida / MpGAP Star 66 Code Issues Pull requests Discussions Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads workflow nanopore pipeline nextflow reproducible-research reproducible-science pacbio polish illumina spades genome-assembly hybrid-assemblies unicycler flye canu pilon Updated Jan 22, 2026 Nextflow
UPHL-BioNGS / Donut_Falls Star 17 Code Issues Pull requests Assembly of Nanopore Sequencing bioinformatics nanopore nextflow denovo-assembly bandage polishing hybrid-assembly fastp busco unicycler flye clair3 Updated Sep 1, 2026 Nextflow
wennj / plasmid-collapse-gene-loss-unicycler-galaxy Star 0 Code Issues Pull requests Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer. bioinformatics-pipeline galaxy oxford-nanopore genome-assembly illumina-sequencing multiplicities bacterial-genomes nanopore-sequencing galaxy-workflow minion-sequencer unicycler plasmid-prediction Updated Nov 30, 2024 R
pommevilla / snakemake-genome-assembly-practice Star 0 Code Issues Pull requests bioinformatics snakemake genome-assembly fastp unicycler bbduk checkm2 Updated Nov 27, 2023 Python
wanyuac / Assembly_toolkit Star 0 Code Issues Pull requests Scripts for de novo genome assembly bioinformatics genomics bioinformatics-pipeline spades de-novo-assembly unicycler Updated Sep 6, 2025 Shell