Kuanhao-Chao / splam Star 59 Code Issues Pull requests ✂️ Deep learning-based splice site predictor that improves spliced alignments rna-seq deep-learning annotation alignment convolutional-neural-networks residual-networks spliced-alignment splice-junctions splicing transcript-assembly Updated Feb 26, 2025 C++
Kuanhao-Chao / Transcript_Quantifier_Assessment Star 5 Code Issues Pull requests 🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level. rna-seq assembly gtex transcriptomics read-simulation transcript-quantification transcript-assembly transcript-noise Updated May 1, 2022 Shell
dzhang32 / tuni Star 3 Code Issues Pull requests Unify transcripts across different samples gtf gff transcript-assembly Updated Jun 9, 2024 Rust