SISTR (Salmonella In Silico Typing Resource) command-line tool

UPHL's Reference Free Pipeline

EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic research.

In silico serotype prediction for Listeria monocytogenes

E. coli K-antigen group 2 and group 3 typing database

EnteroMark: A species-optimized computational pipeline for rapid, accessible Enterococcus faecium genotyping and surveillance .Complete VRE genomic analysis in minutes — not hours

Kaptive databases for the Klebsiella oxytoca Species Complex (and Klebsiella indica)

IRIDA plugin for ECTyper (E.coli in silico typing tool)

Pathogen whole genome sequence (WGS) data analysis pipeline

A command-line tool for predicting K-antigen type classifications in Escherichia coli.

Kaptive databases for the Klebsiella pneumoniae Species Complex

🧬 Analyze *Escherichia coli* strains efficiently with EcoliTyper, a unified tool for MLST, serotyping, and Clermont phylotyping in one workflow.

A template repo for managing Kaptive databases

IRIDA Plugin for SISTR Salmonella Typing Tool