[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
PromKappa 3.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns). The main output of the application consists of a series of images that are saved in the 'chart' (or 'chart_comp') folder and which can be later analyzed using different methods.
Bioinformatics N' Stuff
This repository contains custom code used for analysis in El Ghamrasni et al.,
Python second-order approximation to the PromoterHunter code
Workflow to identify functional cis-regulatory regions for each annotated cell type
The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
Bioinformatics pipeline to identify and prioritize activating Promoter SNVs (pSNVs) using genomic, transcriptomic and annotation data.
The Eukaryotic Promoter Database (EPD) website
Exploratory Evo 2 promoter-grammar analysis with frozen aggregate statistics and figures for human protein-coding genes.
FirstPromoter — independent third-party profile of a public API surface, by API Evangelist. Affiliate and referral tracking platform for SaaS companies with a REST API for managing promoters, tracking referrals, and handling reward distribution.
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