gene-annotation

Visualizing transcript structure and annotation using ggplot2

A minimal desktop app for easy and convenient gene annotation and lookup.

Pipeline for the identification of (coding) gene structures in draft genomes.

Annotate DNA sequences for Gene Ontology terms

Structural variant VCF annotation, filtering, duplicate removal and comparison

Deep learning methods for feature selection in gene expression autism data.

An R framework for phylostratigraphy

fastest GTF/GFF-to-BED converter chilling around

high-performance BED-to-GTF converter written in Rust

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes

cool BED-to-GFF3 converter that runs in parallel

The post-TOGA processing pipeline

scripts associated with yam genome assembly

Integrative systems analysis identifying the associations between genes and biological process or modules.

Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations

Co-occurrence of enzyme domains

GTF/GFF per gene non-overlapping exon length calculator

long read differential expression analysis and splice variant analysis

Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders