CallForge — a reproducible Nextflow pipeline for targeted-capture germline analysis: FASTQ to annotated joint callset (SNV/indel, CNV, STR, paralog-aware) with cohort QC, GIAB benchmarking, and rare-variant burden testing. Pairs with CaptureForge; runs standalone.
bioinformatics annotation genomics nextflow reproducible-research gatk variant-calling hybridization-capture germline ngs-pipeline targeted-sequencing burden-testing
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Updated
Sep 11, 2026 - Python