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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.
README.md

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 99 78

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 63 28

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 21

Repositories

Showing 10 of 61 repositories
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy's past year of commit activity
    Python 99 78 41 16 Updated Sep 14, 2026
  • scil-documentation Public

    Documentation for the SCIL

    scilus/scil-documentation's past year of commit activity
    Python 4 21 12 6 Updated Sep 8, 2026
  • sf-tractomics Public

    Diffusion MRI Pipeline for human brain

    scilus/sf-tractomics's past year of commit activity
    Nextflow 7 MIT 10 7 0 Updated Sep 3, 2026
  • scilus_website Public

    SCIL website

    scilus/scilus_website's past year of commit activity
    HTML 0 MIT 8 0 0 Updated Sep 1, 2026
  • sf-pediatric-documentation Public
    scilus/sf-pediatric-documentation's past year of commit activity
    MDX 0 1 0 0 Updated Aug 20, 2026
  • sf-pediatric Public

    sf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/sf-pediatric's past year of commit activity
    Nextflow 11 MIT 1 1 0 Updated Aug 19, 2026
  • mi-brain Public
    scilus/mi-brain's past year of commit activity
    C++ 0 0 2 1 Updated Aug 10, 2026
  • sf-mouse Public

    Diffusion MRI Pipeline for Mouse

    scilus/sf-mouse's past year of commit activity
    Nextflow 1 MIT 2 5 0 Updated Jul 31, 2026
  • sf-mouse-documentation Public
    scilus/sf-mouse-documentation's past year of commit activity
    MDX 0 1 0 1 Updated Jul 27, 2026
  • sf-tractomics-documentation Public

    sf-tractomics documentation

    scilus/sf-tractomics-documentation's past year of commit activity
    MDX 0 3 2 0 Updated Jun 20, 2026
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