Skip to content
@qiime2

QIIME 2

README.md

Welcome to the QIIME 2 GitHub Organization! đź‘‹

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

Pinned Loading

  1. distributions distributions Public

    Makefile 5 11

  2. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 30

  3. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 81 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 1 Updated Mar 31, 2026
  • gut-to-soil-tutorial Public

    The gut-to-soil axis microbiome analysis tutorial

    qiime2/gut-to-soil-tutorial’s past year of commit activity
    Makefile 1 4 5 0 Updated Mar 31, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 11 5 4 Updated Mar 30, 2026
  • action-library-packaging Public
    qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Mar 30, 2026
  • q2-boots Public

    q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

    qiime2/q2-boots’s past year of commit activity
    Python 3 BSD-3-Clause 7 10 4 Updated Mar 28, 2026
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 1 2 6 0 Updated Mar 27, 2026
  • q2-diversity Public
    qiime2/q2-diversity’s past year of commit activity
    Python 3 BSD-3-Clause 44 45 2 Updated Mar 27, 2026
  • q2-phylogeny Public

    Phylogenetic reconstruction, and operations on phylogenetic trees.

    qiime2/q2-phylogeny’s past year of commit activity
    Python 5 BSD-3-Clause 20 2 0 Updated Mar 27, 2026
  • q2-cutadapt Public
    qiime2/q2-cutadapt’s past year of commit activity
    Python 4 BSD-3-Clause 18 5 2 Updated Mar 25, 2026
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 2 7 1 Updated Mar 25, 2026
View all repositories

Most used topics

Loading…