Source for cinnetcrash.github.io — a bilingual (Turkish / English) microbial bioinformatics curriculum aimed at microbiologists, veterinarians and clinical lab staff moving into genomics.
It is a static site: plain HTML served by GitHub Pages, no build step.
| Page | Topic |
|---|---|
content/giris.html |
Introduction — what bioinformatics is and why a microbiologist needs it |
content/cmd.html |
Command line basics: shell, files, pipes |
content/python.html |
Python for biologists |
content/sequence.html |
Sequence formats and manipulation |
content/qc.html |
Read quality control |
content/assembly.html |
Genome assembly |
content/annotation.html |
Genome annotation |
content/veritab.html |
Biological databases |
content/visualization.html |
Visualising genomic data |
content/about.html |
About the author |
index.html landing page
content/ the modules above
assets/ CSS, JS, fonts
images/ figures and screenshots
oldfiles/ earlier revisions, kept for reference
_config.yml GitHub Pages configuration
sitemap.xml for search engines
Edit the HTML directly and push to the default branch — GitHub Pages redeploys
within a minute or so. There is no Jekyll templating to run locally; opening
index.html in a browser is an accurate preview.
| Repository | Why it's related |
|---|---|
| Biyoinformatik_TR | Earlier Turkish-language training material, the predecessor of this site |
| EQA_demo | Interactive WGS outbreak investigation, linked from the curriculum |
| genomehunter | Browser game version of the same pipeline, for children |
| Introduction_to_Python_for_WWS | Notebook-based Python course |
Corrections and additions are welcome — open an issue or a pull request. If you use the material in teaching, a note to say so is appreciated but not required.