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Fixes #1079

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@josemduarte josemduarte left a comment

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LGTM thank you!

@Pasjonat90D
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Hi,
It looks like the PR is still pending and hasn’t been merged by the CI/CD. Could you please rerun it? Everything seems fine on my side, but the pipeline seems to be stuck.

Thanks!

@josemduarte
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I tried re-running but it failed again. It looks like a problem with the SCOP external resource. I'll try again later.

@josemduarte
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I've run tests locally and it works fine. I'll merge it.

@josemduarte josemduarte merged commit 70e9a74 into biojava:master Dec 8, 2025
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@Pasjonat90D
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Thank you for manually merging the PR. I’ve noticed the additional comments from @jlerbsc. If you would like, please reopen the ticket and assign it to me.

@josemduarte
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Good point, just reopened. It was closed automatically by github with this PR.

@jlerbsc
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jlerbsc commented Dec 14, 2025

Hi @Pasjonat90D Have you tried using indepth to automatically fix these defects?

@Pasjonat90D
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Hi @jlerbsc,
no, I used SonarQube to detect and fix them manually.

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Quality: Sonar S1155 "Collection.isEmpty()" should be used to test for emptiness

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