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1. openfold openfold Public

   Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

   Python 3.3k 666

2. openfold-3 openfold-3 Public

   A fully open source biomolecular structure prediction model based on AlphaFold3

   Python 662 91

3. genie2 genie2 Public

   Protein structure diffusion model for unconditional protein generation and motif scaffolding

   Python 190 33

4. rgn2 rgn2 Public

   Python 110 30

5. proteinnet proteinnet Public

   Standardized data set for machine learning of protein structure

   Python 913 138

6. hsm hsm Public

   Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

   Jupyter Notebook 72 22