Hello.The following error occurred when I was running Sweed. I have checked the VCF file with the VCF -Validator and the VCF file is fine. What is the reason for this error? Is there any way to solve it? This question has been bothering me for a few days and I would appreciate a reply. Thanks again!
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SweeD
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SweeD version 4.0.0 released by Nikolaos Alachiotis and Pavlos Pavlidis in July 2018.
Code contributions by Antonis Kioukis and Aggelos Koropoulis.
Command:
/public1/home/casdao/kdylvfenghua/kdy_wumm/software/sweed-master/SweeD -name allsample -input allsample1.vcf -grid 960 -minsnps 200 -maf 0.05 -missing 0.1
Input file format (0:ms, 1:fasta, 2:macs, 3:vcf, 4:sf, 5:mbs): 3
Total number of samples in the VCF: 454
Samples excluded from the analysis: 0
Alignment 1
SweeD: SweeD_Input.c:3500: getGTdata: Assertion `index<statesTotal' failed.
Chromosome: CM027080.1Aborted (core dumped)
Hello.The following error occurred when I was running Sweed. I have checked the VCF file with the VCF -Validator and the VCF file is fine. What is the reason for this error? Is there any way to solve it? This question has been bothering me for a few days and I would appreciate a reply. Thanks again!
SweeD version 4.0.0 released by Nikolaos Alachiotis and Pavlos Pavlidis in July 2018.
Code contributions by Antonis Kioukis and Aggelos Koropoulis.
Command:
Input file format (0:ms, 1:fasta, 2:macs, 3:vcf, 4:sf, 5:mbs): 3
Total number of samples in the VCF: 454
Samples excluded from the analysis: 0
Alignment 1
SweeD: SweeD_Input.c:3500: getGTdata: Assertion `index<statesTotal' failed.
Chromosome: CM027080.1Aborted (core dumped)