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@MICA-MNI

MICA-MNI

Multimodal Imaging and Conenctome Analysis Lab at the Montreal Neurological Institute.

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  1. BrainSpace BrainSpace Public

    BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

    Python 252 88

  2. BrainStat BrainStat Public

    A statistics and context decoding toolbox for neuroimaging.

    Jupyter Notebook 118 28

  3. ENIGMA ENIGMA Public

    The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macro…

    Jupyter Notebook 185 47

  4. micaopen micaopen Public

    Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

    Jupyter Notebook 81 45

  5. micapipe micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    Shell 121 44

  6. z-brains z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    Python 12 7

Repositories

Showing 10 of 35 repositories
  • z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    MICA-MNI/z-brains's past year of commit activity
    Python 12 BSD-3-Clause 7 14 0 Updated Sep 6, 2026
  • 2025_in-vivo_tauPET-mk6240_TLE Public

    This repository provides code for analyzing in-vivo tau aggregation in temporal lobe epilepsy (TLE) using 18F-MK6240 PET. It includes preprocessing, statistical analysis, and visualization scripts to assess tau deposition, connectivity patterns, and cognitive associations in TLE patients and controls.

    MICA-MNI/2025_in-vivo_tauPET-mk6240_TLE's past year of commit activity
    Jupyter Notebook 2 0 1 0 Updated Aug 26, 2026
  • micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    MICA-MNI/micapipe's past year of commit activity
    Shell 121 GPL-3.0 44 43 (3 issues need help) 5 Updated Aug 10, 2026
  • hippogenes Public Forked from alexander-ngo/hippogenes

    Toolbox and repository for vertex-wise mapping of hippocampal gene expression

    MICA-MNI/hippogenes's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Aug 5, 2026
  • MICA-7t Public

    scripts for 7t sorting and organizing

    MICA-MNI/MICA-7t's past year of commit activity
    Shell 8 GPL-3.0 0 0 0 Updated Jul 21, 2026
  • LAMAReg Public

    Label Augmented Modality Agnostic Registration (LAMAReg) is a MRI resgistration technique combines deep learning-based segmentation and numerical solutions to generate precise non linear warpfields

    MICA-MNI/LAMAReg's past year of commit activity
    Python 14 MIT 1 6 1 Updated Jul 15, 2026
  • MICAFlow Public

    The easy way to process MRI data

    MICA-MNI/MICAFlow's past year of commit activity
    Python 8 0 2 0 Updated Jul 15, 2026
  • hippTauPet Public
    MICA-MNI/hippTauPet's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 23, 2026
  • BrainSpace Public

    BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

    MICA-MNI/BrainSpace's past year of commit activity
    Python 252 BSD-3-Clause 88 3 2 Updated Jun 9, 2026
  • hippomaps Public Forked from jordandekraker/hippomaps

    Toolbox and data repository for hippocampal surface data

    MICA-MNI/hippomaps's past year of commit activity
    Jupyter Notebook 8 GPL-3.0 7 0 0 Updated May 11, 2026
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