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pyproject.toml
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31 lines (28 loc) · 553 Bytes
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[project]
name = "psp-benchmark"
version = "0.1.0"
description = "High-Performance Protein Structure Prediction Benchmark Pipeline"
requires-python = ">=3.11"
dependencies = [
"snakemake>=8.0",
"biopython>=1.83",
"pyyaml>=6.0",
"pandas>=2.0",
"numpy>=1.26",
"gemmi>=0.6",
"requests>=2.31",
"snakemake-executor-plugin-slurm>=2.0.3",
]
[project.optional-dependencies]
server = [
"fastapi>=0.110",
"uvicorn>=0.27",
]
dev = [
"pytest>=8.0",
"pytest-cov",
]
[dependency-groups]
dev = [
"pytest>=8.0",
]