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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 32 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 31 19

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 18 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 586 repositories
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 3 MIT 0 11 1 Updated Mar 25, 2026
  • nmcp-qc Public

    NMCP quality control services.

    AllenNeuralDynamics/nmcp-qc’s past year of commit activity
    Python 0 0 0 0 Updated Mar 25, 2026
  • Aind.Behavior.IsoForce Public

    A repository for a joystick task

    AllenNeuralDynamics/Aind.Behavior.IsoForce’s past year of commit activity
    C# 0 MIT 0 2 1 Updated Mar 25, 2026
  • nmcp-deploy Public
    AllenNeuralDynamics/nmcp-deploy’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 25, 2026
  • nmcp-client Public
    AllenNeuralDynamics/nmcp-client’s past year of commit activity
    TypeScript 0 0 5 0 Updated Mar 25, 2026
  • nmcp-api Public
    AllenNeuralDynamics/nmcp-api’s past year of commit activity
    TypeScript 0 0 0 0 Updated Mar 25, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    C# 0 MIT 0 8 3 Updated Mar 25, 2026
  • Aind.Behavior.Telekinesis Public

    Task implemention of brain-computer interface experiments

    AllenNeuralDynamics/Aind.Behavior.Telekinesis’s past year of commit activity
    C# 0 MIT 1 3 1 Updated Mar 25, 2026
  • AllenNeuralDynamics/Aind.Behavior.DirectedForaging’s past year of commit activity
    C# 0 MIT 0 2 0 Updated Mar 25, 2026
  • aind-dynamic-foraging-qc Public

    Capsule for the QC of the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-qc’s past year of commit activity
    Python 0 MIT 0 6 2 Updated Mar 25, 2026

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